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This module contains the code that is related to dask and/or sent to the dask workers. Avoid import unnecessary dependencies here.

ClusterInfo dataclass

Information to connect to a DPR Dask cluster.

Attributes:

Name Type Description
jupyter_token str

JupyterHub API token. Only used in cluster mode, not local mode.

dask_gateway_address str

Dask gateway address, defined in Jupyter, with a different value for each organization.

cluster_label str

Dask cluster label e.g. "dask-l0"

cluster_instance str | None

Dask cluster instance ID (something like "dask-gateway.17e196069443463495547eb97f532834").

Source code in docs/rs-dpr-service/rs_dpr_service/dask/call_dask.py
@dataclass
class ClusterInfo:
    """
    Information to connect to a DPR Dask cluster.

    Attributes:
        jupyter_token: JupyterHub API token. Only used in cluster mode, not local mode.
        dask_gateway_address: Dask gateway address, defined in Jupyter, with a different value for each organization.
        cluster_label: Dask cluster label e.g. "dask-l0"
        cluster_instance: Dask cluster instance ID (something like "dask-gateway.17e196069443463495547eb97f532834").
        If instance is empty, the DPR processor will use the first cluster with the given label.
    """

    jupyter_token: str
    dask_gateway_address: str
    cluster_label: str
    cluster_instance: str | None = ""

ProcessorCaller

Run the DPR processor.

NOTE: All methods except init are run from the dask pod.

Source code in docs/rs-dpr-service/rs_dpr_service/dask/call_dask.py
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class ProcessorCaller:
    """
    Run the DPR processor.

    NOTE: All methods except __init__ are run from the dask pod.
    """

    def __init__(
        self,
        caller_env: dict[str, str],
        span_context: SpanContext,
        dask_gateway_address: str,
        cluster_info: ClusterInfo,
        processor_name: str,
        job_id: str,
        data: dict,
    ):
        """
        Constructor.

        Attributes:
            caller_env: env variables coming from the caller
            span_context: OpenTelemetry caller span context
            dask_gateway_address: Dask Gateway address
            cluster_info: Information to connect to a DPR Dask cluster.
            processor_name: processor name used as opentelemetry service name
            job_id: pygeoapi job id saved in the database.
            data: data to send to the processor
            s3: Bucket access to read/write configuration and report files
            local_report_dir: Report directory on the local disk
            s3_report_dir: Report directory on the S3 bucket
            experimental_config: Experimental configuration, used only for testing
            payload_contents: Payload file contents
            command: Command used to trigger eopf-cpm
            log_path: Path of the logging file on local disk
            working_dir: Working directory on local disk
            to_be_uploaded: Output products to be uploaded to the s3 bucket at the end of the processor
            exec_times: Execution times with their description
        """
        # NOTE: some imports exists in the dask worker environment, not in the rs-dpr-service env,
        # so we cannot import them from the top of this module.
        import s3fs  # pylint: disable=import-outside-toplevel

        # This should run on the rs-dpr-service container
        logger.debug(f"[JOB:{job_id}] Call 'ProcessorCaller.__init__' from {get_ip_address()!r}")

        self.caller_env: dict[str, str] = caller_env
        self.span_context = span_context
        self.dask_gateway_address: str = dask_gateway_address
        self.cluster_info: ClusterInfo = cluster_info
        self.processor_name: str = processor_name
        self.job_id: str = job_id
        self.data: dict = data
        self.s3: Any | None = None  # AnyPath
        self.local_report_dir: str = ""
        self.s3_report_dir: str = ""
        self.experimental_config: ExperimentalConfig | None = None
        self.payload_contents: dict = {}
        self.command: list = []
        self.log_path: str = ""
        self.working_dir: str = ""
        self.to_be_uploaded: list[tuple[s3fs.S3FileSystem, str, str]] = []
        self.exec_times: list[tuple[str, float]] = []

    def copy_caller_env(self):
        """
        Copy environment variables from the calling service environment to the dask client.
        This function is run from inside the dask pod.
        """
        # Copy env vars from the caller
        keys = [
            "RSPY_LOCAL_MODE",
            "S3_ACCESSKEY",
            "S3_SECRETKEY",
            "S3_ENDPOINT",
            "S3_REGION",
            "PREFECT_BUCKET_NAME",
            "PREFECT_BUCKET_FOLDER",
            # Opentelemetry
            "OTEL_SERVICE_NAME",
            "TEMPO_ENDPOINT",
            "TRACEPARENT",
            "TRACESTATE",
            # Only in local mode
            "LOCAL_DASK_USERNAME",
            "LOCAL_DASK_PASSWORD",
            # Vars from ~/.s3cfg, when debugging a processor locally in local mode
            "access_key",
            "bucket_location",
            "host_base",
            "host_bucket",
            "secret_key",
        ]

        # Copy our environment variables
        for key in keys:
            if value := self.caller_env.get(key):
                os.environ[key] = value
        # Copy all OpenTelemetry environment variables
        for key, value in self.caller_env.items():
            if key.startswith("OTEL_"):
                os.environ[key] = value

        # Debug gRPC Connectivity
        # https://opentelemetry.io/docs/zero-code/python/troubleshooting/#grpc-connectivity
        # os.environ["GRPC_VERBOSITY"] = "debug"
        # os.environ["GRPC_TRACE"] = "http,call_error,connectivity_state"

        # Reload this module to read updated env vars (local/cluster mode)
        reload(settings)

        # Init AWS env
        self.set_aws_env()

    def set_aws_env(self):
        """Init the AWS environment variables from the bucket credentials."""

        os.environ["AWS_ACCESS_KEY_ID"] = os.environ["S3_ACCESSKEY"]
        os.environ["AWS_SECRET_ACCESS_KEY"] = os.environ["S3_SECRETKEY"]
        os.environ["AWS_ENDPOINT_URL_S3"] = os.environ["S3_ENDPOINT"]
        os.environ["AWS_DEFAULT_REGION"] = os.environ["S3_REGION"]

        os.environ["AWS_DEFAULT_OUTPUT"] = "json"

    def hide_secrets(self, log: str) -> str:
        """The logs print secrets in clear e.g 'key': '<my-secret>'... so we hide them with a regex"""
        for key in (
            "key",
            "secret",
            "endpoint_url",
            "region_name",
            "api_token",
            "password",
        ):
            log = re.sub(rf"""(['"]{key}['"])\s*:\s*['"][^'"]*['"]""", r"\1: ***", log)
        return log

    def get_tasktable(
        self,
        module_name: str,
        class_name: str,
    ):
        """
        Return the DPR tasktable. This function is run from inside the dask pod.
        """
        # Copy env vars from the caller
        self.copy_caller_env()

        # Init opentelemetry and record all task in an Opentelemetry span
        init_traces()
        with start_span(__name__, f"dpr_dask_tasktable_{class_name}", self.span_context):
            # Load the python class
            class_ = getattr(importlib.import_module(module_name), class_name)

            # Get the tasktable for default mode. See:
            # https://cpm.pages.eopf.copernicus.eu/eopf-cpm/main/processor-orchestration-guide/tasktables.html#tasktables
            logger.debug(f"[JOB:{self.job_id}] Available modes for {class_}: {class_.get_available_modes()}")
            default_mode = class_.get_default_mode()
            tasktable = class_.get_tasktable_description(default_mode)
            return tasktable

    def run_processor(self) -> dict:
        """
        Run processor from the dask pod.
        """
        # Copy env vars from the caller
        self.copy_caller_env()

        # Init opentelemetry and record all task in an Opentelemetry span
        init_traces()
        with start_span(__name__, f"[{self.cluster_info.cluster_label}] dpr_dask_processor", self.span_context) as span:
            try:
                # This should run on the dask worker
                logger.debug(f"[JOB:{self.job_id}] Call 'ProcessorCaller.run' from {get_ip_address()!r}")

                # Run a pip freeze
                logger.debug(
                    f"[JOB:{self.job_id}] "
                    f"Python package versions (pip freeze):\n{json.dumps(list(freeze.freeze()), indent=2)}",
                )
                self.init()

                start_time = time.time()
                self.trigger()
                self.exec_times.append(("Run processor", time.time() - start_time))

                return self.finalize()

            # In all cases, run the finalize function
            except Exception as e:  # pylint: disable=broad-exception-caught
                try:
                    self.finalize()
                except Exception:  # pylint: disable=broad-exception-caught
                    logger.exception(f"[JOB:{self.job_id}] {traceback.format_exc()}")
                record_error(span, e)
                raise

    # pylint: disable=import-outside-toplevel
    def init(self):
        """
        Init from the dask pod.
        """
        # Read arguments
        s3_config_dir = self.data["s3_config_dir"]
        payload_subpath = self.data["payload_subpath"]
        self.s3_report_dir = self.data["s3_report_dir"]

        # Check if s3_config_dir is a local path or S3 path
        is_local = not s3_config_dir.startswith(("s3://", "S3://"))

        if is_local:
            # Local path: use it directly without downloading from S3
            local_config_dir = s3_config_dir
            self.s3 = None
        else:
            # S3 path: download the configuration folder from the S3 bucket
            from eopf.common.file_utils import (  # pylint: disable=import-outside-toplevel
                AnyPath,
            )

            self.s3 = AnyPath(
                s3_config_dir,
                key=os.environ["S3_ACCESSKEY"],
                secret=os.environ["S3_SECRETKEY"],
                client_kwargs={
                    "endpoint_url": os.environ["S3_ENDPOINT"],
                    "region_name": os.environ["S3_REGION"],
                },
            )

            # Download the configuration folder from the S3 bucket into a local temp folder.
            # NOTE: AnyPath.get returns either a str with old eopf versions, or another AnyPath with newest versions.
            downloaded_dir: AnyPath | str = self.s3.get(recursive=True)
            if isinstance(downloaded_dir, AnyPath):
                if hasattr(downloaded_dir, "fs_path"):  # CPM >= 3.0.0rc4
                    local_config_dir = downloaded_dir.fs_path
                else:
                    local_config_dir = downloaded_dir.path
            else:
                local_config_dir = downloaded_dir

        logger.info(f"[JOB:{self.job_id}] The dpr processing task started in {s3_config_dir}")

        # Payload path and parent dir
        payload_file = osp.realpath(osp.join(local_config_dir, payload_subpath))
        payload_dir = osp.dirname(payload_file)

        # Change working directory
        self.working_dir = osp.join(local_config_dir, payload_dir)
        os.chdir(self.working_dir)

        # Create the reports dir
        # WARNING: fields from the payload file: dask__export_graphs, performance_report_file, ... should
        # also use this directory: ./reports
        self.local_report_dir = osp.realpath("./reports")
        self.log_path = osp.join(self.local_report_dir, Path(payload_file).with_suffix(".processor.log").name)
        shutil.rmtree(self.local_report_dir, ignore_errors=True)
        os.makedirs(self.local_report_dir, exist_ok=True)

        # Customize the payload file values
        self.customize_payload_file(payload_file)

        # Init the command that will be used to trigger the processor
        self.command = [
            "eopf_otel",
            "trigger",
            "local",
            payload_file,
        ]

        # Validate the payload file (only in newest versions)
        import eopf  # pylint: disable=import-outside-toplevel

        if Version(eopf.__version__) >= Version("3.1.0rc1"):
            from eopf.cli.cli_triggering_triggers import validate_payload_command

            validate_payload_command.main(
                args=[payload_file, "--level", "preflight"],
                standalone_mode=False,  # raise instead of sys.exit()
            )

    def customize_payload_file(self, payload_file: str):
        """Customize the payload file values"""

        # Read the payload file contents
        with open(payload_file, encoding="utf-8") as opened:
            payload_contents = yaml.safe_load(opened)

        self.set_payload_s3_secrets(payload_contents)

        # Write the Dask context configuration in the payload file.
        self.write_dask_context(payload_contents)

        # Handle the experimental configuration
        self.handle_experimental_config(payload_contents)

        # Write the payload contents back to the file
        with open(payload_file, "w+", encoding="utf-8") as opened:
            opened.write(yaml.safe_dump(payload_contents))

        # Display the payload file contents in the log and log file
        with open(payload_file, encoding="utf-8") as opened:

            self.payload_contents = yaml.safe_load(opened)
            dumped = self.hide_secrets(json.dumps(self.payload_contents, indent=2))
            message = f"Dask cluster label: {self.cluster_info.cluster_label!r}\n"
            message += f"Dask cluster instance: {self.cluster_info.cluster_instance!r}\n"
            message += f"Payload file contents: {payload_file!r}\n{dumped}\n"

            logger.debug(f"[JOB:{self.job_id}] {message}")

            with open(self.log_path, "w", encoding="utf-8") as log_file:
                log_file.write(message)

            # Get secret configuration file (optional)
            secret_conf_files = self.payload_contents.get("secret")
            if secret_conf_files:
                self.write_secret_conf_files(secret_conf_files, payload_contents, payload_file)

            # Get logging configuration file
            # log_conf_file = self.payload_contents.get("logging")

        # Patch the log config to set "disable_existing_loggers" to False else the logs are disabled.
        # This is a workaround for https://gitlab.eopf.copernicus.eu/cpm/eopf-cpm/-/issues/837
        # if log_conf_file:
        #     log_conf_file = osp.join(payload_dir, log_conf_file)
        #     logger.warning("Patching logging configuration to use"
        # "'disable_existing_loggers=False': {log_conf_file!r}")
        #     with open(log_conf_file, encoding="utf-8") as opened:
        #         log_conf_contents = yaml.safe_load(opened)
        #         log_conf_contents["disable_existing_loggers"] = False
        #     with open(log_conf_file, "w+", encoding="utf-8") as opened:
        #         opened.write(yaml.safe_dump(log_conf_contents))

    @staticmethod
    def set_payload_s3_secrets(payload_contents: dict):
        """Build processor S3 aliases from input credentials in the payload."""
        os.environ.pop("S3_SECRETS_JSON_BASE64", None)
        credentials = []
        for product in payload_contents.get("io", {}).get("input_products", []):
            params = product.get("reader_params") or product.get("store_params") or {}
            storage_options = params.get("storage_options")
            if not storage_options:
                continue
            client_kwargs = storage_options.get("client_kwargs") or {}
            credential = {
                "key": storage_options["key"],
                "secret": storage_options["secret"],
                "endpoint_url": client_kwargs["endpoint_url"],
                "region_name": client_kwargs["region_name"],
            }
            os.environ["S3_KEY"] = storage_options["key"]
            os.environ["S3_SECRET"] = storage_options["secret"]
            os.environ["S3_URL"] = client_kwargs["endpoint_url"]
            os.environ["S3_REGION"] = client_kwargs["region_name"]
            if credential not in credentials:
                credentials.append(credential)
        if not credentials:
            return
        if len(credentials) > 1:
            raise ValueError("Multiple input credential sets cannot be mapped to a single S3 alias set")

        # Later update with s3output and csinput
        data = {"s3input": credentials[0]}
        os.environ["S3_SECRETS_JSON_BASE64"] = base64.b64encode(json.dumps(data).encode()).decode()

    @staticmethod
    def _collect_storage_options(payload_contents: dict) -> list[dict]:
        io = payload_contents.get("io", {})
        result = []
        for product in io.get("input_products", []):
            if so := product.get("reader_params", product.get("store_params", {})).get("storage_options"):
                result.append(so)
        for product in io.get("output_products", []):
            if so := product.get("writer_params", product.get("store_params", {})).get("storage_options"):
                result.append(so)
        for adf in io.get("adfs", []):
            if so := adf.get("adf_params", adf.get("store_params", {})).get("storage_options"):
                result.append(so)
        return result

    def write_secret_conf_files(self, secret_conf_files: list[str], payload_contents: dict, payload_file: str):
        """
        Write the external secret json config file(s) from the ones provided in the payload.
        """
        if len(secret_conf_files) > 1:
            logger.error(f"[JOB:{self.job_id}] A single secret json config file is expected for now")
            return
        secret_conf_file = osp.join(osp.dirname(payload_file), secret_conf_files[0])

        all_storage_options = self._collect_storage_options(payload_contents)
        if not all_storage_options:
            logger.warning(
                f"[JOB:{self.job_id}] No storage_options found in payload, skipping secret conf file writing",
            )
            return

        unique_credentials = {
            (
                so.get("key"),
                so.get("secret"),
                so.get("client_kwargs", {}).get("endpoint_url"),
                so.get("client_kwargs", {}).get("region_name"),
            )
            for so in all_storage_options
        }

        if len(unique_credentials) > 1:
            logger.error(
                f"[JOB:{self.job_id}] "
                "Multiple different credential sets found in payload storage_options, "
                "cannot write a single secret conf file",
            )
            return

        key, secret, endpoint_url, region_name = unique_credentials.pop()

        with open(secret_conf_file, "w", encoding="utf-8") as f:
            json.dump(
                {
                    "s3": {
                        "key": key,
                        "secret": secret,
                        "client_kwargs": {"endpoint_url": endpoint_url, "region_name": region_name},
                    },
                },
                f,
                indent=2,
            )

        logger.info(f"[JOB:{self.job_id}] Secret configuration file written: {secret_conf_file}")

    def write_dask_context(self, payload_contents: dict):
        """
        Write the Dask context configuration in the payload file.
        This Dask context is used by EOPF to connect to the Dask cluster.

        NOTE: rs-dpr-service connects to the Dask cluster, then submits an EOPF triggering to this cluster.
        Then EOPF reads the Dask context from the payload file to submit the DPR processor run to this cluster.

        We need to make sure that rs-dpr-service and EOPF use the same cluster.

        So it's safer that rs-dpr-service writes the Dask context in the payload file with the same configuration
        that is used to submit the EOPF triggering.
        """
        if settings.LOCAL_MODE:
            auth = {
                "type": "basic",
                "username": os.environ["LOCAL_DASK_USERNAME"],
                "password": os.environ["LOCAL_DASK_PASSWORD"],
            }
        else:  # cluster mode
            auth = {
                "type": "jupyterhub",
                "api_token": self.cluster_info.jupyter_token,
            }

        payload_contents.update(
            {
                "context_managers": [
                    {
                        "module": "eopf.dask_utils.dask_context_manager",
                        "context_manager": "DaskContext",
                        "parameters": {
                            "cluster_type": "gateway",
                            "cluster_config": {
                                "address": self.dask_gateway_address,
                                "reuse_cluster": self.cluster_info.cluster_instance,
                                "auth": auth,
                            },
                        },
                    },
                ],
            },
        )

    def handle_experimental_config(self, payload_contents: dict):
        """Handle the experimental configuration"""

        # Check if an experimental configuraition is set (only for testing)
        self.experimental_config = ExperimentalConfig(**self.data.get("experimental_config", {}))
        if self.experimental_config == ExperimentalConfig():
            return

        # Hard replace the dask gateway configuration with a LocalCluster
        if self.experimental_config.local_cluster.enabled:
            for manager in payload_contents["context_managers"]:
                parameters = manager.get("parameters", {})
                parameters["cluster_type"] = "local"
                if cluster_config := parameters.get("cluster_config", {}):
                    cluster_config.pop("address", None)
                    cluster_config.pop("reuse_cluster", None)
                    cluster_config.pop("auth", None)
                    cluster_config.pop("workers", None)

                    cluster_config["n_workers"] = self.experimental_config.local_cluster.n_workers
                    cluster_config["memory_limit"] = self.experimental_config.local_cluster.memory_limit
                    cluster_config["threads_per_worker"] = self.experimental_config.local_cluster.threads_per_worker

        # Read/write on the local disk rather than on the S3 bucket. Only works with a LocalCluster.
        if self.experimental_config.local_files.local_dir:

            # For each input or output product
            start_time = time.time()
            for io_key, io_value in payload_contents.get("io", {}).items():
                for product in io_value:
                    self.handle_local_product(io_key, product)
            self.exec_times.append(("Download input files", time.time() - start_time))

    def handle_local_product(self, io_key: str, original_product: dict):
        """Handle local products for the experimental configuration"""

        import s3fs  # pylint: disable=import-outside-toplevel
        from eopf.common.env_utils import (  # pylint: disable=import-outside-toplevel
            resolve_env_vars,
        )

        if not self.experimental_config:
            return

        # resolve all env_vars in the payload
        product = resolve_env_vars(original_product)

        # Get product path
        if not (s3_path := product.get("path")):
            return

        # If the path is not on a s3 bucket, this means the path is already local, so we do nothing
        if not s3_path.lower().startswith("s3:/"):
            return

        # Corresponding path on the local disk
        local_path = Path(f"{self.experimental_config.local_files.local_dir}/{s3_path[4:].lstrip('/')}")

        # Read S3 credentials
        store_params = product["store_params"]
        if store_params.get("s3_secret_alias"):
            raise RuntimeError("TODO: handle bucket credentials from a 'secrets.json' file")
        credentials = s3fs.S3FileSystem(**store_params["storage_options"])

        # Input or output product ?
        is_output = io_key == "output_products"
        is_input = not is_output

        def remove_local_path():
            """Remove product on local disk"""
            if local_path.is_file() or local_path.is_symlink():
                local_path.unlink()
            elif local_path.is_dir():
                shutil.rmtree(local_path)

        if is_input:
            # Remove the existing input product on local disk
            if self.experimental_config.local_files.overwrite_input:
                remove_local_path()

            # Download the product locally if not already there
            if not local_path.exists():
                logger.info(f"[JOB:{self.job_id}] Download {s3_path!r} to {str(local_path)!r}")
                local_path.parent.mkdir(parents=True, exist_ok=True)
                credentials.get(s3_path, local_path, recursive=True)

        if is_output:
            # Always remove the existing output product on local disk
            remove_local_path()

            # The output product will be uploaded at the end of the processor
            if self.experimental_config.local_files.upload_output:
                self.to_be_uploaded.append((credentials, str(local_path), s3_path))

        # Use the local path in the payload file
        original_product["path"] = str(local_path)

    def handle_cancellation(self, proc: subprocess.Popen, log_file: TextIOWrapper) -> distributed.Event | None:
        """Handle cancellation of an eopf task."""

        # Check that we are in a dask context
        try:
            get_client()
        except ValueError:
            # This should always be the case in cluster mode
            if settings.CLUSTER_MODE:
                raise
            # Else in local mode, just exit the method
            return None

        # Send/catch a dask distributed event for the cancellation of this job
        cancel_event = distributed.Event(CANCEL_JOB.format(job_id=self.job_id))

        def cancel_function():
            """If the cancellation event is caught, terminate the subprocess."""
            cancel_event.wait()  # go to the next line of code when the cancellation event is caught

            # If the subprocess has already finished, do nothing
            if proc.returncode is not None:
                return

            msg = f"\nForce termination of EOPF job: {self.job_id!r}\n"
            log_file.write(msg)
            logger.warning(f"[JOB:{self.job_id}] {msg}")

            # Call .terminate() to send a SIGTERM. This signal can be caught by eopf to do some cleaning.
            logger.warning(f"[JOB:{self.job_id}] Send SIGTERM signal")
            proc.terminate()

            # Wait a few moments, then send a SIGKILL in case the SIGTERM was not enough.
            # NOTE: the delay value should be configurable for each processor.
            # Some processors could e.g. clean directories so it could take longer to finish.
            time.sleep(60)
            logger.warning(f"[JOB:{self.job_id}] Send SIGKILL signal")
            proc.kill()

        # Run this in a separate thread.
        # Use daemon=True so we don't have to wait for the thread to finish to exit the main process.
        cancel_thread = threading.Thread(target=cancel_function, daemon=True)
        cancel_thread.start()

        return cancel_event

    def trigger(self):
        """Trigger eopf-cpm execution"""

        # Everything is run on the rs-dpr-service host machine.
        # This is used to debug in local mode / docker compose on your local machine.
        # We call eopf from python code.
        if settings.LOCAL_MODE and self.experimental_config and self.experimental_config.local_cluster.enabled:
            from eopf.triggering.runner import (  # pylint: disable=import-outside-toplevel
                EORunner,
            )

            EORunner().run(self.payload_contents)
            return

        # Trigger EOPF processing with trace context propagation, catch output
        # NOTE: we run it in a subprocess because it's easier that way to capture stdout and stderr,
        # or cancel the subprocess.
        with start_span(__name__, "eopf.subprocess") as span:
            span.set_attribute("subprocess.command", str(self.command))
            span.set_attribute("subprocess.working_dir", str(self.working_dir))
            span.set_attribute("subprocess.log_file", self.log_path)

            logger.info(
                f"[JOB:{self.job_id}] Trigger EOPF processing with command '{self.command}' "
                f"in working directory '{self.working_dir}'",
            )
            self._launch_eopf_subprocess(span, self._prepare_env_with_trace_context())

    # Number of subprocess output lines coalesced into a single forwarded log record, and the
    # max time a buffered line waits before being flushed anyway.
    _LOG_BATCH_SIZE = 50
    _LOG_BATCH_INTERVAL_SECONDS = 1

    def _launch_eopf_subprocess(self, span: Span, env: dict[str, str]):
        """Trigger eopf-cpm execution in a subprocess"""
        with subprocess.Popen(
            self.command,
            stdout=subprocess.PIPE,
            stderr=subprocess.STDOUT,
            text=True,
            cwd=self.working_dir,
            env=env,
        ) as proc:

            span.set_attribute("subprocess.pid", proc.pid)
            # Write output to a log file and string + redirect to the prefect logger
            with open(self.log_path, "a", encoding="utf-8") as log_file:

                # Handle cancellation of eopf processing
                cancel_event = self.handle_cancellation(proc, log_file)

                # Read eopf stdout. Use select() so we can periodically check whether the
                # buffered batch is due for a time-based flush, even while no new line has
                # arrived yet (readline() alone would block for as long as the processor stays
                # quiet, which could delay a partial batch by a very long time).
                batch: list[str] = []
                last_flush = time.monotonic()
                while proc.stdout:
                    interval = self._LOG_BATCH_INTERVAL_SECONDS
                    ready, _, _ = select.select([proc.stdout], [], [], interval)
                    if ready:
                        line = proc.stdout.readline()
                        if line == "":
                            break

                        # Hide secrets from logs
                        line = self.hide_secrets(line)

                        # Write to log file and string
                        log_file.write(line)

                        # Buffer non-empty lines
                        line = line.rstrip()
                        if line:
                            batch.append(line)

                    # Flush once the batch is full, or once it's been waiting long enough
                    if self._should_flush_log_batch(batch, last_flush):
                        self._flush_log_batch(batch)
                        last_flush = time.monotonic()

                # Flush the remaining buffered lines, if any
                self._flush_log_batch(batch)

            # Wait for the execution to finish
            status_code = proc.wait()

            span.set_attribute("subprocess.returncode", status_code)

            # We don't need the cancellation thread anymore.
            # Send the cancellation event it's been waiting for, to make sure the thread will finish.
            if cancel_event:
                cancel_event.set()

            # Raise exception if the eopf status code is != 0
            if status_code:
                err_msg = f"EOPF error, status code {status_code!r}, please see the log."
                span.set_status(Status(StatusCode.ERROR, err_msg))
                raise RuntimeError(err_msg)

            span.set_status(Status(StatusCode.OK))
            logger.info(f"[JOB:{self.job_id}] EOPF finished successfully with status code {status_code!r}")

    def _should_flush_log_batch(self, batch: list[str], last_flush: float) -> bool:
        """Return True if the buffered batch is full, or non-empty and waiting long enough."""
        if not batch:
            return False
        if len(batch) >= self._LOG_BATCH_SIZE:
            return True
        return (time.monotonic() - last_flush) >= self._LOG_BATCH_INTERVAL_SECONDS

    def _flush_log_batch(self, batch: list[str]) -> None:
        """Log buffered subprocess output lines as a single record, then clear the buffer."""
        if batch:
            joined = "\n".join(batch)
            logger.info(f"[JOB:{self.job_id}] {joined}")
            batch.clear()

    def _prepare_env_with_trace_context(self) -> dict[str, str]:
        # https://oneuptime.com/blog/post/2026-02-06-trace-python-subprocess-calls-opentelemetry/view#context-propagation-to-child-processes
        # https://opentelemetry.io/docs/languages/python/propagation/#manual-context-propagation
        env = os.environ.copy()

        # Inject trace context into environment variables
        carrier: dict[str, str] = {}
        inject(carrier)

        logger.info(f"[JOB:{self.job_id}] OpenTelemetry carrier: {carrier!r}")

        # Convert carrier to environment variables
        if "traceparent" in carrier:
            env["TRACEPARENT"] = carrier["traceparent"]
        if "tracestate" in carrier:
            env["TRACESTATE"] = carrier["tracestate"]

        # Also pass as JSON for scripts that can parse it
        env["OTEL_TRACE_CONTEXT"] = json.dumps(carrier)

        # Set the opentelemetry service name
        env["OTEL_SERVICE_NAME"] = f"dpr.{self.processor_name}"

        return env

    def finalize(self) -> dict:
        """Code to run at the end of the processor."""

        try:
            # Upload the reports dir to the s3 bucket (only for S3 paths)
            # For local paths, self.s3 is None (set in init()), so this block is skipped.
            # Reports remain in the local shared disk.
            if self.s3 and self.s3_report_dir.lower().startswith("s3://"):
                logger.info(f"[JOB:{self.job_id}] Upload reports {self.local_report_dir!r} to {self.s3_report_dir!r}")
                self.s3._fs.put(  # pylint: disable=protected-access
                    self.local_report_dir,
                    self.s3_report_dir,
                    recursive=True,
                )
            else:
                logger.debug(
                    f"The upload is not performed: local path = {self.local_report_dir} |"
                    f"s3 path = {self.s3_report_dir}",
                )
            # Upload local output products to the s3 bucket
            start_time = time.time()
            for credentials, local_path, s3_path in self.to_be_uploaded:
                logger.info(f"[JOB:{self.job_id}] Upload {local_path!r} to {s3_path!r}")
                try:
                    credentials.rm(s3_path, recursive=True)  # remove existing from s3 bucket
                except FileNotFoundError:
                    pass
                credentials.put(str(local_path), s3_path, recursive=True)

            if self.to_be_uploaded:
                self.exec_times.append(("Upload output files", time.time() - start_time))

        except Exception as exception:  # pylint: disable=broad-exception-caught
            logger.error(f"[JOB:{self.job_id}] {exception}")

        for description, exec_time in self.exec_times:
            logger.info(f"[JOB:{self.job_id}] [TIME] {description}: {str(timedelta(seconds=exec_time))}")

        # NOTE: with the real processor, what should we return ?
        return {}

__init__(caller_env, span_context, dask_gateway_address, cluster_info, processor_name, job_id, data)

Constructor.

Attributes:

Name Type Description
caller_env

env variables coming from the caller

span_context

OpenTelemetry caller span context

dask_gateway_address

Dask Gateway address

cluster_info

Information to connect to a DPR Dask cluster.

processor_name

processor name used as opentelemetry service name

job_id

pygeoapi job id saved in the database.

data

data to send to the processor

s3

Bucket access to read/write configuration and report files

local_report_dir

Report directory on the local disk

s3_report_dir

Report directory on the S3 bucket

experimental_config

Experimental configuration, used only for testing

payload_contents

Payload file contents

command

Command used to trigger eopf-cpm

log_path

Path of the logging file on local disk

working_dir

Working directory on local disk

to_be_uploaded

Output products to be uploaded to the s3 bucket at the end of the processor

exec_times

Execution times with their description

Source code in docs/rs-dpr-service/rs_dpr_service/dask/call_dask.py
def __init__(
    self,
    caller_env: dict[str, str],
    span_context: SpanContext,
    dask_gateway_address: str,
    cluster_info: ClusterInfo,
    processor_name: str,
    job_id: str,
    data: dict,
):
    """
    Constructor.

    Attributes:
        caller_env: env variables coming from the caller
        span_context: OpenTelemetry caller span context
        dask_gateway_address: Dask Gateway address
        cluster_info: Information to connect to a DPR Dask cluster.
        processor_name: processor name used as opentelemetry service name
        job_id: pygeoapi job id saved in the database.
        data: data to send to the processor
        s3: Bucket access to read/write configuration and report files
        local_report_dir: Report directory on the local disk
        s3_report_dir: Report directory on the S3 bucket
        experimental_config: Experimental configuration, used only for testing
        payload_contents: Payload file contents
        command: Command used to trigger eopf-cpm
        log_path: Path of the logging file on local disk
        working_dir: Working directory on local disk
        to_be_uploaded: Output products to be uploaded to the s3 bucket at the end of the processor
        exec_times: Execution times with their description
    """
    # NOTE: some imports exists in the dask worker environment, not in the rs-dpr-service env,
    # so we cannot import them from the top of this module.
    import s3fs  # pylint: disable=import-outside-toplevel

    # This should run on the rs-dpr-service container
    logger.debug(f"[JOB:{job_id}] Call 'ProcessorCaller.__init__' from {get_ip_address()!r}")

    self.caller_env: dict[str, str] = caller_env
    self.span_context = span_context
    self.dask_gateway_address: str = dask_gateway_address
    self.cluster_info: ClusterInfo = cluster_info
    self.processor_name: str = processor_name
    self.job_id: str = job_id
    self.data: dict = data
    self.s3: Any | None = None  # AnyPath
    self.local_report_dir: str = ""
    self.s3_report_dir: str = ""
    self.experimental_config: ExperimentalConfig | None = None
    self.payload_contents: dict = {}
    self.command: list = []
    self.log_path: str = ""
    self.working_dir: str = ""
    self.to_be_uploaded: list[tuple[s3fs.S3FileSystem, str, str]] = []
    self.exec_times: list[tuple[str, float]] = []

copy_caller_env()

Copy environment variables from the calling service environment to the dask client. This function is run from inside the dask pod.

Source code in docs/rs-dpr-service/rs_dpr_service/dask/call_dask.py
def copy_caller_env(self):
    """
    Copy environment variables from the calling service environment to the dask client.
    This function is run from inside the dask pod.
    """
    # Copy env vars from the caller
    keys = [
        "RSPY_LOCAL_MODE",
        "S3_ACCESSKEY",
        "S3_SECRETKEY",
        "S3_ENDPOINT",
        "S3_REGION",
        "PREFECT_BUCKET_NAME",
        "PREFECT_BUCKET_FOLDER",
        # Opentelemetry
        "OTEL_SERVICE_NAME",
        "TEMPO_ENDPOINT",
        "TRACEPARENT",
        "TRACESTATE",
        # Only in local mode
        "LOCAL_DASK_USERNAME",
        "LOCAL_DASK_PASSWORD",
        # Vars from ~/.s3cfg, when debugging a processor locally in local mode
        "access_key",
        "bucket_location",
        "host_base",
        "host_bucket",
        "secret_key",
    ]

    # Copy our environment variables
    for key in keys:
        if value := self.caller_env.get(key):
            os.environ[key] = value
    # Copy all OpenTelemetry environment variables
    for key, value in self.caller_env.items():
        if key.startswith("OTEL_"):
            os.environ[key] = value

    # Debug gRPC Connectivity
    # https://opentelemetry.io/docs/zero-code/python/troubleshooting/#grpc-connectivity
    # os.environ["GRPC_VERBOSITY"] = "debug"
    # os.environ["GRPC_TRACE"] = "http,call_error,connectivity_state"

    # Reload this module to read updated env vars (local/cluster mode)
    reload(settings)

    # Init AWS env
    self.set_aws_env()

customize_payload_file(payload_file)

Customize the payload file values

Source code in docs/rs-dpr-service/rs_dpr_service/dask/call_dask.py
def customize_payload_file(self, payload_file: str):
    """Customize the payload file values"""

    # Read the payload file contents
    with open(payload_file, encoding="utf-8") as opened:
        payload_contents = yaml.safe_load(opened)

    self.set_payload_s3_secrets(payload_contents)

    # Write the Dask context configuration in the payload file.
    self.write_dask_context(payload_contents)

    # Handle the experimental configuration
    self.handle_experimental_config(payload_contents)

    # Write the payload contents back to the file
    with open(payload_file, "w+", encoding="utf-8") as opened:
        opened.write(yaml.safe_dump(payload_contents))

    # Display the payload file contents in the log and log file
    with open(payload_file, encoding="utf-8") as opened:

        self.payload_contents = yaml.safe_load(opened)
        dumped = self.hide_secrets(json.dumps(self.payload_contents, indent=2))
        message = f"Dask cluster label: {self.cluster_info.cluster_label!r}\n"
        message += f"Dask cluster instance: {self.cluster_info.cluster_instance!r}\n"
        message += f"Payload file contents: {payload_file!r}\n{dumped}\n"

        logger.debug(f"[JOB:{self.job_id}] {message}")

        with open(self.log_path, "w", encoding="utf-8") as log_file:
            log_file.write(message)

        # Get secret configuration file (optional)
        secret_conf_files = self.payload_contents.get("secret")
        if secret_conf_files:
            self.write_secret_conf_files(secret_conf_files, payload_contents, payload_file)

finalize()

Code to run at the end of the processor.

Source code in docs/rs-dpr-service/rs_dpr_service/dask/call_dask.py
def finalize(self) -> dict:
    """Code to run at the end of the processor."""

    try:
        # Upload the reports dir to the s3 bucket (only for S3 paths)
        # For local paths, self.s3 is None (set in init()), so this block is skipped.
        # Reports remain in the local shared disk.
        if self.s3 and self.s3_report_dir.lower().startswith("s3://"):
            logger.info(f"[JOB:{self.job_id}] Upload reports {self.local_report_dir!r} to {self.s3_report_dir!r}")
            self.s3._fs.put(  # pylint: disable=protected-access
                self.local_report_dir,
                self.s3_report_dir,
                recursive=True,
            )
        else:
            logger.debug(
                f"The upload is not performed: local path = {self.local_report_dir} |"
                f"s3 path = {self.s3_report_dir}",
            )
        # Upload local output products to the s3 bucket
        start_time = time.time()
        for credentials, local_path, s3_path in self.to_be_uploaded:
            logger.info(f"[JOB:{self.job_id}] Upload {local_path!r} to {s3_path!r}")
            try:
                credentials.rm(s3_path, recursive=True)  # remove existing from s3 bucket
            except FileNotFoundError:
                pass
            credentials.put(str(local_path), s3_path, recursive=True)

        if self.to_be_uploaded:
            self.exec_times.append(("Upload output files", time.time() - start_time))

    except Exception as exception:  # pylint: disable=broad-exception-caught
        logger.error(f"[JOB:{self.job_id}] {exception}")

    for description, exec_time in self.exec_times:
        logger.info(f"[JOB:{self.job_id}] [TIME] {description}: {str(timedelta(seconds=exec_time))}")

    # NOTE: with the real processor, what should we return ?
    return {}

get_tasktable(module_name, class_name)

Return the DPR tasktable. This function is run from inside the dask pod.

Source code in docs/rs-dpr-service/rs_dpr_service/dask/call_dask.py
def get_tasktable(
    self,
    module_name: str,
    class_name: str,
):
    """
    Return the DPR tasktable. This function is run from inside the dask pod.
    """
    # Copy env vars from the caller
    self.copy_caller_env()

    # Init opentelemetry and record all task in an Opentelemetry span
    init_traces()
    with start_span(__name__, f"dpr_dask_tasktable_{class_name}", self.span_context):
        # Load the python class
        class_ = getattr(importlib.import_module(module_name), class_name)

        # Get the tasktable for default mode. See:
        # https://cpm.pages.eopf.copernicus.eu/eopf-cpm/main/processor-orchestration-guide/tasktables.html#tasktables
        logger.debug(f"[JOB:{self.job_id}] Available modes for {class_}: {class_.get_available_modes()}")
        default_mode = class_.get_default_mode()
        tasktable = class_.get_tasktable_description(default_mode)
        return tasktable

handle_cancellation(proc, log_file)

Handle cancellation of an eopf task.

Source code in docs/rs-dpr-service/rs_dpr_service/dask/call_dask.py
def handle_cancellation(self, proc: subprocess.Popen, log_file: TextIOWrapper) -> distributed.Event | None:
    """Handle cancellation of an eopf task."""

    # Check that we are in a dask context
    try:
        get_client()
    except ValueError:
        # This should always be the case in cluster mode
        if settings.CLUSTER_MODE:
            raise
        # Else in local mode, just exit the method
        return None

    # Send/catch a dask distributed event for the cancellation of this job
    cancel_event = distributed.Event(CANCEL_JOB.format(job_id=self.job_id))

    def cancel_function():
        """If the cancellation event is caught, terminate the subprocess."""
        cancel_event.wait()  # go to the next line of code when the cancellation event is caught

        # If the subprocess has already finished, do nothing
        if proc.returncode is not None:
            return

        msg = f"\nForce termination of EOPF job: {self.job_id!r}\n"
        log_file.write(msg)
        logger.warning(f"[JOB:{self.job_id}] {msg}")

        # Call .terminate() to send a SIGTERM. This signal can be caught by eopf to do some cleaning.
        logger.warning(f"[JOB:{self.job_id}] Send SIGTERM signal")
        proc.terminate()

        # Wait a few moments, then send a SIGKILL in case the SIGTERM was not enough.
        # NOTE: the delay value should be configurable for each processor.
        # Some processors could e.g. clean directories so it could take longer to finish.
        time.sleep(60)
        logger.warning(f"[JOB:{self.job_id}] Send SIGKILL signal")
        proc.kill()

    # Run this in a separate thread.
    # Use daemon=True so we don't have to wait for the thread to finish to exit the main process.
    cancel_thread = threading.Thread(target=cancel_function, daemon=True)
    cancel_thread.start()

    return cancel_event

handle_experimental_config(payload_contents)

Handle the experimental configuration

Source code in docs/rs-dpr-service/rs_dpr_service/dask/call_dask.py
def handle_experimental_config(self, payload_contents: dict):
    """Handle the experimental configuration"""

    # Check if an experimental configuraition is set (only for testing)
    self.experimental_config = ExperimentalConfig(**self.data.get("experimental_config", {}))
    if self.experimental_config == ExperimentalConfig():
        return

    # Hard replace the dask gateway configuration with a LocalCluster
    if self.experimental_config.local_cluster.enabled:
        for manager in payload_contents["context_managers"]:
            parameters = manager.get("parameters", {})
            parameters["cluster_type"] = "local"
            if cluster_config := parameters.get("cluster_config", {}):
                cluster_config.pop("address", None)
                cluster_config.pop("reuse_cluster", None)
                cluster_config.pop("auth", None)
                cluster_config.pop("workers", None)

                cluster_config["n_workers"] = self.experimental_config.local_cluster.n_workers
                cluster_config["memory_limit"] = self.experimental_config.local_cluster.memory_limit
                cluster_config["threads_per_worker"] = self.experimental_config.local_cluster.threads_per_worker

    # Read/write on the local disk rather than on the S3 bucket. Only works with a LocalCluster.
    if self.experimental_config.local_files.local_dir:

        # For each input or output product
        start_time = time.time()
        for io_key, io_value in payload_contents.get("io", {}).items():
            for product in io_value:
                self.handle_local_product(io_key, product)
        self.exec_times.append(("Download input files", time.time() - start_time))

handle_local_product(io_key, original_product)

Handle local products for the experimental configuration

Source code in docs/rs-dpr-service/rs_dpr_service/dask/call_dask.py
def handle_local_product(self, io_key: str, original_product: dict):
    """Handle local products for the experimental configuration"""

    import s3fs  # pylint: disable=import-outside-toplevel
    from eopf.common.env_utils import (  # pylint: disable=import-outside-toplevel
        resolve_env_vars,
    )

    if not self.experimental_config:
        return

    # resolve all env_vars in the payload
    product = resolve_env_vars(original_product)

    # Get product path
    if not (s3_path := product.get("path")):
        return

    # If the path is not on a s3 bucket, this means the path is already local, so we do nothing
    if not s3_path.lower().startswith("s3:/"):
        return

    # Corresponding path on the local disk
    local_path = Path(f"{self.experimental_config.local_files.local_dir}/{s3_path[4:].lstrip('/')}")

    # Read S3 credentials
    store_params = product["store_params"]
    if store_params.get("s3_secret_alias"):
        raise RuntimeError("TODO: handle bucket credentials from a 'secrets.json' file")
    credentials = s3fs.S3FileSystem(**store_params["storage_options"])

    # Input or output product ?
    is_output = io_key == "output_products"
    is_input = not is_output

    def remove_local_path():
        """Remove product on local disk"""
        if local_path.is_file() or local_path.is_symlink():
            local_path.unlink()
        elif local_path.is_dir():
            shutil.rmtree(local_path)

    if is_input:
        # Remove the existing input product on local disk
        if self.experimental_config.local_files.overwrite_input:
            remove_local_path()

        # Download the product locally if not already there
        if not local_path.exists():
            logger.info(f"[JOB:{self.job_id}] Download {s3_path!r} to {str(local_path)!r}")
            local_path.parent.mkdir(parents=True, exist_ok=True)
            credentials.get(s3_path, local_path, recursive=True)

    if is_output:
        # Always remove the existing output product on local disk
        remove_local_path()

        # The output product will be uploaded at the end of the processor
        if self.experimental_config.local_files.upload_output:
            self.to_be_uploaded.append((credentials, str(local_path), s3_path))

    # Use the local path in the payload file
    original_product["path"] = str(local_path)

hide_secrets(log)

The logs print secrets in clear e.g 'key': ''... so we hide them with a regex

Source code in docs/rs-dpr-service/rs_dpr_service/dask/call_dask.py
def hide_secrets(self, log: str) -> str:
    """The logs print secrets in clear e.g 'key': '<my-secret>'... so we hide them with a regex"""
    for key in (
        "key",
        "secret",
        "endpoint_url",
        "region_name",
        "api_token",
        "password",
    ):
        log = re.sub(rf"""(['"]{key}['"])\s*:\s*['"][^'"]*['"]""", r"\1: ***", log)
    return log

init()

Init from the dask pod.

Source code in docs/rs-dpr-service/rs_dpr_service/dask/call_dask.py
def init(self):
    """
    Init from the dask pod.
    """
    # Read arguments
    s3_config_dir = self.data["s3_config_dir"]
    payload_subpath = self.data["payload_subpath"]
    self.s3_report_dir = self.data["s3_report_dir"]

    # Check if s3_config_dir is a local path or S3 path
    is_local = not s3_config_dir.startswith(("s3://", "S3://"))

    if is_local:
        # Local path: use it directly without downloading from S3
        local_config_dir = s3_config_dir
        self.s3 = None
    else:
        # S3 path: download the configuration folder from the S3 bucket
        from eopf.common.file_utils import (  # pylint: disable=import-outside-toplevel
            AnyPath,
        )

        self.s3 = AnyPath(
            s3_config_dir,
            key=os.environ["S3_ACCESSKEY"],
            secret=os.environ["S3_SECRETKEY"],
            client_kwargs={
                "endpoint_url": os.environ["S3_ENDPOINT"],
                "region_name": os.environ["S3_REGION"],
            },
        )

        # Download the configuration folder from the S3 bucket into a local temp folder.
        # NOTE: AnyPath.get returns either a str with old eopf versions, or another AnyPath with newest versions.
        downloaded_dir: AnyPath | str = self.s3.get(recursive=True)
        if isinstance(downloaded_dir, AnyPath):
            if hasattr(downloaded_dir, "fs_path"):  # CPM >= 3.0.0rc4
                local_config_dir = downloaded_dir.fs_path
            else:
                local_config_dir = downloaded_dir.path
        else:
            local_config_dir = downloaded_dir

    logger.info(f"[JOB:{self.job_id}] The dpr processing task started in {s3_config_dir}")

    # Payload path and parent dir
    payload_file = osp.realpath(osp.join(local_config_dir, payload_subpath))
    payload_dir = osp.dirname(payload_file)

    # Change working directory
    self.working_dir = osp.join(local_config_dir, payload_dir)
    os.chdir(self.working_dir)

    # Create the reports dir
    # WARNING: fields from the payload file: dask__export_graphs, performance_report_file, ... should
    # also use this directory: ./reports
    self.local_report_dir = osp.realpath("./reports")
    self.log_path = osp.join(self.local_report_dir, Path(payload_file).with_suffix(".processor.log").name)
    shutil.rmtree(self.local_report_dir, ignore_errors=True)
    os.makedirs(self.local_report_dir, exist_ok=True)

    # Customize the payload file values
    self.customize_payload_file(payload_file)

    # Init the command that will be used to trigger the processor
    self.command = [
        "eopf_otel",
        "trigger",
        "local",
        payload_file,
    ]

    # Validate the payload file (only in newest versions)
    import eopf  # pylint: disable=import-outside-toplevel

    if Version(eopf.__version__) >= Version("3.1.0rc1"):
        from eopf.cli.cli_triggering_triggers import validate_payload_command

        validate_payload_command.main(
            args=[payload_file, "--level", "preflight"],
            standalone_mode=False,  # raise instead of sys.exit()
        )

run_processor()

Run processor from the dask pod.

Source code in docs/rs-dpr-service/rs_dpr_service/dask/call_dask.py
def run_processor(self) -> dict:
    """
    Run processor from the dask pod.
    """
    # Copy env vars from the caller
    self.copy_caller_env()

    # Init opentelemetry and record all task in an Opentelemetry span
    init_traces()
    with start_span(__name__, f"[{self.cluster_info.cluster_label}] dpr_dask_processor", self.span_context) as span:
        try:
            # This should run on the dask worker
            logger.debug(f"[JOB:{self.job_id}] Call 'ProcessorCaller.run' from {get_ip_address()!r}")

            # Run a pip freeze
            logger.debug(
                f"[JOB:{self.job_id}] "
                f"Python package versions (pip freeze):\n{json.dumps(list(freeze.freeze()), indent=2)}",
            )
            self.init()

            start_time = time.time()
            self.trigger()
            self.exec_times.append(("Run processor", time.time() - start_time))

            return self.finalize()

        # In all cases, run the finalize function
        except Exception as e:  # pylint: disable=broad-exception-caught
            try:
                self.finalize()
            except Exception:  # pylint: disable=broad-exception-caught
                logger.exception(f"[JOB:{self.job_id}] {traceback.format_exc()}")
            record_error(span, e)
            raise

set_aws_env()

Init the AWS environment variables from the bucket credentials.

Source code in docs/rs-dpr-service/rs_dpr_service/dask/call_dask.py
def set_aws_env(self):
    """Init the AWS environment variables from the bucket credentials."""

    os.environ["AWS_ACCESS_KEY_ID"] = os.environ["S3_ACCESSKEY"]
    os.environ["AWS_SECRET_ACCESS_KEY"] = os.environ["S3_SECRETKEY"]
    os.environ["AWS_ENDPOINT_URL_S3"] = os.environ["S3_ENDPOINT"]
    os.environ["AWS_DEFAULT_REGION"] = os.environ["S3_REGION"]

    os.environ["AWS_DEFAULT_OUTPUT"] = "json"

set_payload_s3_secrets(payload_contents) staticmethod

Build processor S3 aliases from input credentials in the payload.

Source code in docs/rs-dpr-service/rs_dpr_service/dask/call_dask.py
@staticmethod
def set_payload_s3_secrets(payload_contents: dict):
    """Build processor S3 aliases from input credentials in the payload."""
    os.environ.pop("S3_SECRETS_JSON_BASE64", None)
    credentials = []
    for product in payload_contents.get("io", {}).get("input_products", []):
        params = product.get("reader_params") or product.get("store_params") or {}
        storage_options = params.get("storage_options")
        if not storage_options:
            continue
        client_kwargs = storage_options.get("client_kwargs") or {}
        credential = {
            "key": storage_options["key"],
            "secret": storage_options["secret"],
            "endpoint_url": client_kwargs["endpoint_url"],
            "region_name": client_kwargs["region_name"],
        }
        os.environ["S3_KEY"] = storage_options["key"]
        os.environ["S3_SECRET"] = storage_options["secret"]
        os.environ["S3_URL"] = client_kwargs["endpoint_url"]
        os.environ["S3_REGION"] = client_kwargs["region_name"]
        if credential not in credentials:
            credentials.append(credential)
    if not credentials:
        return
    if len(credentials) > 1:
        raise ValueError("Multiple input credential sets cannot be mapped to a single S3 alias set")

    # Later update with s3output and csinput
    data = {"s3input": credentials[0]}
    os.environ["S3_SECRETS_JSON_BASE64"] = base64.b64encode(json.dumps(data).encode()).decode()

trigger()

Trigger eopf-cpm execution

Source code in docs/rs-dpr-service/rs_dpr_service/dask/call_dask.py
def trigger(self):
    """Trigger eopf-cpm execution"""

    # Everything is run on the rs-dpr-service host machine.
    # This is used to debug in local mode / docker compose on your local machine.
    # We call eopf from python code.
    if settings.LOCAL_MODE and self.experimental_config and self.experimental_config.local_cluster.enabled:
        from eopf.triggering.runner import (  # pylint: disable=import-outside-toplevel
            EORunner,
        )

        EORunner().run(self.payload_contents)
        return

    # Trigger EOPF processing with trace context propagation, catch output
    # NOTE: we run it in a subprocess because it's easier that way to capture stdout and stderr,
    # or cancel the subprocess.
    with start_span(__name__, "eopf.subprocess") as span:
        span.set_attribute("subprocess.command", str(self.command))
        span.set_attribute("subprocess.working_dir", str(self.working_dir))
        span.set_attribute("subprocess.log_file", self.log_path)

        logger.info(
            f"[JOB:{self.job_id}] Trigger EOPF processing with command '{self.command}' "
            f"in working directory '{self.working_dir}'",
        )
        self._launch_eopf_subprocess(span, self._prepare_env_with_trace_context())

write_dask_context(payload_contents)

Write the Dask context configuration in the payload file. This Dask context is used by EOPF to connect to the Dask cluster.

NOTE: rs-dpr-service connects to the Dask cluster, then submits an EOPF triggering to this cluster. Then EOPF reads the Dask context from the payload file to submit the DPR processor run to this cluster.

We need to make sure that rs-dpr-service and EOPF use the same cluster.

So it's safer that rs-dpr-service writes the Dask context in the payload file with the same configuration that is used to submit the EOPF triggering.

Source code in docs/rs-dpr-service/rs_dpr_service/dask/call_dask.py
def write_dask_context(self, payload_contents: dict):
    """
    Write the Dask context configuration in the payload file.
    This Dask context is used by EOPF to connect to the Dask cluster.

    NOTE: rs-dpr-service connects to the Dask cluster, then submits an EOPF triggering to this cluster.
    Then EOPF reads the Dask context from the payload file to submit the DPR processor run to this cluster.

    We need to make sure that rs-dpr-service and EOPF use the same cluster.

    So it's safer that rs-dpr-service writes the Dask context in the payload file with the same configuration
    that is used to submit the EOPF triggering.
    """
    if settings.LOCAL_MODE:
        auth = {
            "type": "basic",
            "username": os.environ["LOCAL_DASK_USERNAME"],
            "password": os.environ["LOCAL_DASK_PASSWORD"],
        }
    else:  # cluster mode
        auth = {
            "type": "jupyterhub",
            "api_token": self.cluster_info.jupyter_token,
        }

    payload_contents.update(
        {
            "context_managers": [
                {
                    "module": "eopf.dask_utils.dask_context_manager",
                    "context_manager": "DaskContext",
                    "parameters": {
                        "cluster_type": "gateway",
                        "cluster_config": {
                            "address": self.dask_gateway_address,
                            "reuse_cluster": self.cluster_info.cluster_instance,
                            "auth": auth,
                        },
                    },
                },
            ],
        },
    )

write_secret_conf_files(secret_conf_files, payload_contents, payload_file)

Write the external secret json config file(s) from the ones provided in the payload.

Source code in docs/rs-dpr-service/rs_dpr_service/dask/call_dask.py
def write_secret_conf_files(self, secret_conf_files: list[str], payload_contents: dict, payload_file: str):
    """
    Write the external secret json config file(s) from the ones provided in the payload.
    """
    if len(secret_conf_files) > 1:
        logger.error(f"[JOB:{self.job_id}] A single secret json config file is expected for now")
        return
    secret_conf_file = osp.join(osp.dirname(payload_file), secret_conf_files[0])

    all_storage_options = self._collect_storage_options(payload_contents)
    if not all_storage_options:
        logger.warning(
            f"[JOB:{self.job_id}] No storage_options found in payload, skipping secret conf file writing",
        )
        return

    unique_credentials = {
        (
            so.get("key"),
            so.get("secret"),
            so.get("client_kwargs", {}).get("endpoint_url"),
            so.get("client_kwargs", {}).get("region_name"),
        )
        for so in all_storage_options
    }

    if len(unique_credentials) > 1:
        logger.error(
            f"[JOB:{self.job_id}] "
            "Multiple different credential sets found in payload storage_options, "
            "cannot write a single secret conf file",
        )
        return

    key, secret, endpoint_url, region_name = unique_credentials.pop()

    with open(secret_conf_file, "w", encoding="utf-8") as f:
        json.dump(
            {
                "s3": {
                    "key": key,
                    "secret": secret,
                    "client_kwargs": {"endpoint_url": endpoint_url, "region_name": region_name},
                },
            },
            f,
            indent=2,
        )

    logger.info(f"[JOB:{self.job_id}] Secret configuration file written: {secret_conf_file}")

convert_safe_to_zarr(cfg)

Convert from legacy product (safe format) into Zarr format using EOPF in a subprocess.

This runs the rs_dpr_service.safe_to_zarr module as a subprocess, passing config as JSON string.

Source code in docs/rs-dpr-service/rs_dpr_service/dask/call_dask.py
def convert_safe_to_zarr(cfg):
    """
    Convert from legacy product (safe format) into Zarr format using EOPF in a subprocess.

    This runs the rs_dpr_service.safe_to_zarr module as a subprocess, passing config as JSON string.
    """

    # Serialize the config
    cfg_str = json.dumps(cfg)

    # Find the ZIP that this code lives in
    module_path = Path(__file__).resolve()
    zip_path = Path(str(module_path).split(".zip", maxsplit=1)[0] + ".zip")
    if not zip_path.is_file():
        raise RuntimeError(f"Cannot locate rs_dpr_service.zip at {zip_path}")

    # Prepare an env that lets Python import from inside the ZIP
    env = os.environ.copy()
    # prepend the zip onto PYTHONPATH (so zipimport will kick in)
    env["PYTHONPATH"] = str(zip_path) + os.pathsep + env.get("PYTHONPATH", "")

    # Run the converter as a module
    cmd = [sys.executable, "-m", "rs_dpr_service.safe_to_zarr", cfg_str]
    result = subprocess.run(
        cmd,
        env=env,
        capture_output=True,
        text=True,
        check=False,
    )

    if result.returncode != 0:
        raise RuntimeError(f"Conversion failed: {result.stderr.strip()}")
    return result.stdout.strip()

get_ip_address()

Return IP address, see: https://stackoverflow.com/a/166520

Source code in docs/rs-dpr-service/rs_dpr_service/dask/call_dask.py
def get_ip_address() -> str:
    """Return IP address, see: https://stackoverflow.com/a/166520"""
    return socket.gethostbyname(socket.gethostname())

upload_this_module(dask_client)

Upload this current module from the caller environment to the dask client.

WARNING: These modules should not import other modules that are not installed in the dask environment or you'll have import errors.

Parameters:

Name Type Description Default
clients

list of dask clients to which upload the modules.

required
Source code in docs/rs-dpr-service/rs_dpr_service/dask/call_dask.py
def upload_this_module(dask_client: DaskClient):
    """
    Upload this current module from the caller environment to the dask client.

    WARNING: These modules should not import other modules that are not installed in the dask
    environment or you'll have import errors.

    Args:
        clients: list of dask clients to which upload the modules.
    """
    # Root of the current project
    root = Path(__file__).parent.parent

    # Files and dirs to upload and associated name in the zip archive
    files = {
        root / "__init__.py": "rs_dpr_service/__init__.py",
        root / "safe_to_zarr.py": "rs_dpr_service/safe_to_zarr.py",
        root / "dask/__init__.py": "rs_dpr_service/dask/__init__.py",
        root / "dask/call_dask.py": "rs_dpr_service/dask/call_dask.py",
        root / "utils/__init__.py": "rs_dpr_service/utils/__init__.py",
        root / "utils/init_opentelemetry.py": "rs_dpr_service/utils/init_opentelemetry.py",
        root / "utils/logging.py": "rs_dpr_service/utils/logging.py",
        root / "utils/settings.py": "rs_dpr_service/utils/settings.py",
    }

    # We'll create a zip with our files, and upload and install it in all dask workers.
    package_name = root.name  # should be "rs_dpr_service"
    zip_filename = f"{root.name}.zip"

    # But first, if we run this function several times,
    # we need to remove the previous installed zip from the dask workers.
    def remove_previous_zip(dask_worker):
        with contextlib.suppress(FileNotFoundError):
            worker_zip_path = f"{dask_worker.local_directory}/{zip_filename}"
            os.remove(worker_zip_path)
            return f"Removed from dask worker: {worker_zip_path!r}"
        return ""

    logger.debug(json.dumps(dask_client.run(remove_previous_zip), indent=2))

    # From a temp dir
    with tempfile.TemporaryDirectory() as tmpdir:

        # Create a zip with our files
        zip_path = f"{tmpdir}/{zip_filename}"
        with zipfile.ZipFile(zip_path, "w") as zipped:

            # Zip all files
            for key, value in files.items():
                zipped.write(str(key), str(value))

        # Upload zip file to dask clients.
        # This also installs the zipped modules inside the dask python interpreter.
        try:
            dask_client.upload_file(zip_path)

        # We have this error if we scale up the number of workers.
        # But it's OK, the zip file is automatically uploaded to them anyway.
        except KeyError as e:
            logger.debug(f"Ignoring error {e}")

    # If we run this function several times, we need to reload the uploaded modules from the dask workers
    def reload_uploaded():
        reloaded = []
        for module in list(sys.modules.values()):
            if module.__name__.startswith(f"{package_name}."):
                reload(module)
                reloaded.append(module.__name__)
        return f"Reloaded: {reloaded}"

    logger.debug(json.dumps(dask_client.run(reload_uploaded), indent=2))